X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FDBRefFetcher.java;h=4488d02c96127b147a9de0e97f677caa7ea344df;hb=4f24ef0848cf3c43ba0467f31fce1baa5c57aad5;hp=c11910b2c69e010a2e7492875af681fbe57a38d1;hpb=8e728f4ac9c2dc718f97db2e34fc3571a9622f94;p=jalview.git

diff --git a/src/jalview/io/DBRefFetcher.java b/src/jalview/io/DBRefFetcher.java
index c11910b..4488d02 100644
--- a/src/jalview/io/DBRefFetcher.java
+++ b/src/jalview/io/DBRefFetcher.java
@@ -48,6 +48,7 @@ public class DBRefFetcher implements Runnable
   CutAndPasteTransfer output = new CutAndPasteTransfer();
   StringBuffer sbuffer = new StringBuffer();
   boolean uniprotFlag = false;
+  boolean running = false;
 
   public DBRefFetcher()
   {}
@@ -91,9 +92,25 @@ public class DBRefFetcher implements Runnable
     unknownSequences = new ArrayList();
     this.align = align;
     this.dataset = align.getDataset();
+  }
 
+  public boolean fetchDBRefs(boolean waitTillFinished)
+  {
     Thread thread = new Thread(this);
     thread.start();
+    running = true;
+
+    if(waitTillFinished)
+    {
+      while(running)
+      {
+        try{
+          Thread.sleep(500);
+        }catch(Exception ex){}
+      }
+    }
+
+    return true;
   }
 
   /**
@@ -103,6 +120,7 @@ public class DBRefFetcher implements Runnable
   {
     long startTime = System.currentTimeMillis();
     af.setProgressBar("Fetching db refs", startTime);
+    running = true;
 
     try
     {
@@ -187,6 +205,8 @@ public class DBRefFetcher implements Runnable
     af.setProgressBar("DBRef search completed", startTime);
    // promptBeforeBlast();
 
+   running = false;
+
   }