X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FDBRefFetcher.java;h=d57f3be2e97716dcd1208f0e59bdc85c098a5189;hb=fbb18baad3919cbf94fcb5159bbd5269d6af18b4;hp=23e5bf6a9eeca2b91761c0d960f15bf6adf73782;hpb=c9c74c082bdd9323850a864144dc8a9b36399157;p=jalview.git

diff --git a/src/jalview/io/DBRefFetcher.java b/src/jalview/io/DBRefFetcher.java
index 23e5bf6..d57f3be 100644
--- a/src/jalview/io/DBRefFetcher.java
+++ b/src/jalview/io/DBRefFetcher.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -292,7 +292,7 @@ public class DBRefFetcher implements Runnable
       System.out.println("Adding dbref to "+sequence[m].getName()+" : "+
                          entry.getAccession().elementAt(0).toString());
 
-      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence());
+      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence()).toUpperCase();
 
       int absStart = entry.getUniprotSequence().getContent().indexOf(
           nonGapped.toString());