X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FDasSequenceFeatureFetcher.java;h=3186002e2d1859f1cd9a2606e0cef6e98be567d0;hb=fbb18baad3919cbf94fcb5159bbd5269d6af18b4;hp=305160eb9a579c9ac8d09e68eaca14bf959fde7e;hpb=f3581eb4882e66b7d66a9573be5103358196fd2d;p=jalview.git

diff --git a/src/jalview/io/DasSequenceFeatureFetcher.java b/src/jalview/io/DasSequenceFeatureFetcher.java
index 305160e..3186002 100755
--- a/src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/src/jalview/io/DasSequenceFeatureFetcher.java
@@ -247,23 +247,24 @@ public class DasSequenceFeatureFetcher
           // we know the id for this entry, so don't note its ID in the unknownSequences list
          // for (int j = 0; j < uprefs.length; j++)
           {
-
-            // Will have to pass any mapping information to the fetcher - the start/end for the DBRefEntry may not be the same as the sequence's start/end
+            // Will have to pass any mapping information to the fetcher
+            //- the start/end for the DBRefEntry may not be the same as the sequence's start/end
             DasCoordinateSystem cs[] = dasSource.getCoordinateSystem();
-           // if(cs.length>0)
-             // System.out.println("err "+
-            for (int l = 0; l < cs.length; l++)
+            if(cs.length>0)
             {
-              if (jalview.util.DBRefUtils.isDasCoordinateSystem(cs[l].
-                  getName(), uprefs[0]))
+             // for (int l = 0; l < cs.length; l++)
               {
-
-                Cache.log.debug("Launched fetcher for coordinate system " +
-                                   cs[l].getName());
-
-                createFeatureFetcher(seq,
-                                     dasSource,
-                                     uprefs[0].getAccessionId());
+               //
+               if (jalview.util.DBRefUtils
+                    .isDasCoordinateSystem(cs[0].getName(), uprefs[0]))
+                {
+                  Cache.log.debug("Launched fetcher for coordinate system " +
+                                  cs[0].getName());
+
+                  createFeatureFetcher(seq,
+                                       dasSource,
+                                       uprefs[0].getAccessionId());
+                }
               }
             }
           }
@@ -442,7 +443,7 @@ public class DasSequenceFeatureFetcher
     DasSourceReaderImpl reader = new DasSourceReaderImpl();
 
     String registryURL = jalview.bin.Cache.getDefault("DAS_REGISTRY_URL",
-        "http://das.sanger.ac.uk/registry/das1/sources/"
+        "http://www.dasregistry.org/registry/das1/sources/"
         );
 
     try