X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FEBIFetchClient.java;h=2c829ffc1d9b76f2bdb69d107fe17c8060a81598;hb=3ca1aeccca8d3adfd55d1ff8bd447f8bf0d4ac2f;hp=5b21bfe092515f97283c01493969dcf18073d963;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/io/EBIFetchClient.java b/src/jalview/io/EBIFetchClient.java
index 5b21bfe..2c829ff 100755
--- a/src/jalview/io/EBIFetchClient.java
+++ b/src/jalview/io/EBIFetchClient.java
@@ -32,83 +32,151 @@ import javax.xml.namespace.QName;
 import javax.xml.rpc.ParameterMode;
 
 
-public class EBIFetchClient {
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class EBIFetchClient
+{
     Call call;
     String format = "default";
     String style = "raw";
 
-    public EBIFetchClient() {
-        try {
+    /**
+     * Creates a new EBIFetchClient object.
+     */
+    public EBIFetchClient()
+    {
+        try
+        {
             call = (Call) new Service().createCall();
             call.setTargetEndpointAddress(new java.net.URL(
                     "http://www.ebi.ac.uk/ws/services/Dbfetch"));
-        } catch (Exception ex) {
+        }
+        catch (Exception ex)
+        {
         }
     }
 
-    public String[] getSupportedDBs() {
-        try {
+    /**
+     * DOCUMENT ME!
+     *
+     * @return DOCUMENT ME!
+     */
+    public String[] getSupportedDBs()
+    {
+        try
+        {
             call.setOperationName(new QName("urn:Dbfetch", "getSupportedDBs"));
             call.setReturnType(XMLType.SOAP_ARRAY);
 
             return (String[]) call.invoke(new Object[] {  });
-        } catch (Exception ex) {
+        }
+        catch (Exception ex)
+        {
             return null;
         }
     }
 
-    public String[] getSupportedFormats() {
-        try {
+    /**
+     * DOCUMENT ME!
+     *
+     * @return DOCUMENT ME!
+     */
+    public String[] getSupportedFormats()
+    {
+        try
+        {
             call.setOperationName(new QName("urn:Dbfetch", "getSupportedFormats"));
             call.setReturnType(XMLType.SOAP_ARRAY);
 
             return (String[]) call.invoke(new Object[] {  });
-        } catch (Exception ex) {
+        }
+        catch (Exception ex)
+        {
             return null;
         }
     }
 
-    public String[] getSupportedStyles() {
-        try {
+    /**
+     * DOCUMENT ME!
+     *
+     * @return DOCUMENT ME!
+     */
+    public String[] getSupportedStyles()
+    {
+        try
+        {
             call.setOperationName(new QName("urn:Dbfetch", "getSupportedStyles"));
             call.setReturnType(XMLType.SOAP_ARRAY);
 
             return (String[]) call.invoke(new Object[] {  });
-        } catch (Exception ex) {
+        }
+        catch (Exception ex)
+        {
             return null;
         }
     }
 
-    public String[] fetchData(String ids, String f, String s) {
+    /**
+     * DOCUMENT ME!
+     *
+     * @param ids DOCUMENT ME!
+     * @param f DOCUMENT ME!
+     * @param s DOCUMENT ME!
+     *
+     * @return DOCUMENT ME!
+     */
+    public String[] fetchData(String ids, String f, String s)
+    {
         // ids should be of the form uniprot:25KD_SARPE;ADHR_DROPS;
         // max 50 ids can be added at one time
-        try {
+        try
+        {
             call.setOperationName(new QName("urn:Dbfetch", "fetchData"));
             call.addParameter("query", XMLType.XSD_STRING, ParameterMode.IN);
             call.addParameter("format", XMLType.XSD_STRING, ParameterMode.IN);
             call.addParameter("style", XMLType.XSD_STRING, ParameterMode.IN);
             call.setReturnType(XMLType.SOAP_ARRAY);
 
-            if (f != null) {
+            if (f != null)
+            {
                 format = f;
             }
 
-            if (s != null) {
+            if (s != null)
+            {
                 style = s;
             }
 
             return (String[]) call.invoke(new Object[] { ids, format, style });
-        } catch (Exception ex) {
+        }
+        catch (Exception ex)
+        {
             return null;
         }
     }
 
-    public String fetchDataFile(String arg, String f, String s) {
-        if (f != null) {
+    /**
+     * DOCUMENT ME!
+     *
+     * @param arg DOCUMENT ME!
+     * @param f DOCUMENT ME!
+     * @param s DOCUMENT ME!
+     *
+     * @return DOCUMENT ME!
+     */
+    public String fetchDataFile(String arg, String f, String s)
+    {
+        if (f != null)
+        {
             format = f;
         }
 
-        if (s != null) {
+        if (s != null)
+        {
             style = s;
         }
 
@@ -124,21 +192,25 @@ public class EBIFetchClient {
 
         call.setReturnType(qnameAttachment);
 
-        try {
+        try
+        {
             Object ret = call.invoke(new Object[] { arg, format, style });
 
-            if (null == ret) {
+            if (null == ret)
+            {
                 System.err.println("Received null ");
                 throw new AxisFault("", "Received null", null, null);
             }
 
-            if (ret instanceof String) {
+            if (ret instanceof String)
+            {
                 System.err.println("Received problem response from server: " +
                     ret);
                 throw new AxisFault("", (String) ret, null, null);
             }
 
-            if (!(ret instanceof DataHandler)) {
+            if (!(ret instanceof DataHandler))
+            {
                 //The wrong type of object that what was expected.
                 System.err.println("Received problem response from server:" +
                     ret.getClass().getName());
@@ -153,20 +225,28 @@ public class EBIFetchClient {
             //From here we'll just treat the data resource as file.
             String receivedfileName = rdh.getName(); //Get the filename.
 
-            if (receivedfileName == null) {
+            if (receivedfileName == null)
+            {
                 System.err.println("Could not get the file name.");
                 throw new AxisFault("", "Could not get the file name.", null,
                     null);
             }
 
-            if (arg.equalsIgnoreCase("medline")) {
+            if (arg.equalsIgnoreCase("medline"))
+            {
                 return receivedfileName;
-            } else if (arg.equalsIgnoreCase("interpro")) {
+            }
+            else if (arg.equalsIgnoreCase("interpro"))
+            {
                 return receivedfileName;
-            } else {
+            }
+            else
+            {
                 System.err.println(receivedfileName);
             }
-        } catch (Exception ex) {
+        }
+        catch (Exception ex)
+        {
             ex.printStackTrace();
         }