X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FEmblFlatFile.java;fp=src%2Fjalview%2Fio%2FEmblFlatFile.java;h=33701f6934c991f3918174c268523b544d9073bf;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=7808d1a94f5c080e65c5a530327d8a7ef1ccd3b8;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git diff --git a/src/jalview/io/EmblFlatFile.java b/src/jalview/io/EmblFlatFile.java index 7808d1a..33701f6 100644 --- a/src/jalview/io/EmblFlatFile.java +++ b/src/jalview/io/EmblFlatFile.java @@ -1,8 +1,28 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.io; import java.io.IOException; -import jalview.bin.Cache; +import jalview.bin.Console; import jalview.datamodel.DBRefEntry; import jalview.util.DBRefUtils; @@ -124,7 +144,7 @@ public class EmblFlatFile extends EMBLLikeFlatFile this.length = Integer.valueOf(bits[0]); } catch (NumberFormatException e) { - Cache.log.error("bad length read in flatfile, line: " + line); + Console.error("bad length read in flatfile, line: " + line); } }