X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFastaFile.java;h=6d218f434515fa862b5ec3356704d2ae9f97e301;hb=715f6d344d5ccabc6b50622ec02a35b83eb2da95;hp=2e203af61198db26be0cdacd25deeedc76ee3090;hpb=46b5e111bdc21c94237bde96a0133db63e54b88d;p=jalview.git

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 2e203af..6d218f4 100755
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -76,6 +76,7 @@ public class FastaFile extends AlignFile
 
         while ((line = nextLine()) != null)
         {
+            line = line.trim();
             if (line.length() > 0)
             {
                 if (line.charAt(0)=='>')