X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFastaFile.java;h=bfcfaca1a2682a12e951d89e6790ce101f5a2376;hb=37a5dfc3c72a42689e90ad8a0e118e8855d9868b;hp=2e203af61198db26be0cdacd25deeedc76ee3090;hpb=8d3d3b4edf47e543b8b352c1b2c247cfc59122a4;p=jalview.git

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 2e203af..bfcfaca 100755
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -41,16 +41,6 @@ public class FastaFile extends AlignFile
     /**
      * Creates a new FastaFile object.
      *
-     * @param inStr DOCUMENT ME!
-     */
-    public FastaFile(String inStr)
-    {
-        super(inStr);
-    }
-
-    /**
-     * Creates a new FastaFile object.
-     *
      * @param inFile DOCUMENT ME!
      * @param type DOCUMENT ME!
      *
@@ -76,6 +66,7 @@ public class FastaFile extends AlignFile
 
         while ((line = nextLine()) != null)
         {
+            line = line.trim();
             if (line.length() > 0)
             {
                 if (line.charAt(0)=='>')