X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFeaturesFile.java;fp=src%2Fjalview%2Fio%2FFeaturesFile.java;h=3f1cdd11bd506ccb0a1e5307aed3db3cc93a386b;hb=552acd59bb94adcb4b8f6012a0ecb64d05c799cd;hp=7e62f6bc1a6e7ba4fd6bcadc0b1b5b183b824172;hpb=87018985bd993952fd848fd6b6a57d1a50aef484;p=jalview.git

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index 7e62f6b..3f1cdd1 100755
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -1393,7 +1393,9 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI
     } catch (IOException q)
     {
     }
-    FastaFile parser = new FastaFile(this);
+    // Opening a FastaFile object with the remainder of this object's dataIn.
+    // Tell the constructor to NOT close the dataIn when finished.
+    FastaFile parser = new FastaFile(this, false);
     List<SequenceI> includedseqs = parser.getSeqs();
 
     SequenceIdMatcher smatcher = new SequenceIdMatcher(newseqs);