X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFeaturesFile.java;h=23723c7ea994760a739ac21e9016a388d2adacd4;hb=86838d2566aadd780bd460bdc1276eec77875e26;hp=8664cbafe2f501fcfd1492489c5f3c63408eac90;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index 8664cba..23723c7 100755
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -92,7 +92,7 @@ public class FeaturesFile extends AlignFile
    * @return true if features were added
    */
   public boolean parse(AlignmentI align, 
-          Hashtable colours, boolean removeHTML, boolean relaxedIdMatching)
+          Map colours, boolean removeHTML, boolean relaxedIdMatching)
   {
     return parse(align, colours, null, removeHTML, relaxedIdMatching);
   }
@@ -105,8 +105,8 @@ public class FeaturesFile extends AlignFile
    * @param removeHTML - process html strings into plain text
    * @return true if features were added
    */
-  public boolean parse(AlignmentI align, Hashtable colours,
-          Hashtable featureLink, boolean removeHTML)
+  public boolean parse(AlignmentI align, Map colours,
+          Map featureLink, boolean removeHTML)
   {
     return parse(align, colours, featureLink, removeHTML, false);
   }
@@ -122,7 +122,7 @@ public class FeaturesFile extends AlignFile
    * @return true if features were added
    */
   public boolean parse(AlignmentI align,
-          Hashtable colours, Hashtable featureLink, boolean removeHTML, boolean relaxedIdmatching)
+          Map colours, Map featureLink, boolean removeHTML, boolean relaxedIdmatching)
   {
 
     String line = null;
@@ -136,7 +136,7 @@ public class FeaturesFile extends AlignFile
       StringTokenizer st;
       SequenceFeature sf;
       String featureGroup = null, groupLink = null;
-      Hashtable typeLink = new Hashtable();
+      Map typeLink = new Hashtable();
       /**
        * when true, assume GFF style features rather than Jalview style.
        */