X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFeaturesFile.java;h=2dd5f26275e0ed0d12a4c6b706ae9b2281181066;hb=7ac2996be1e7428d1651793c4a1b7e4091f221b9;hp=2d91a085a8a48cd165f1045da59764172cab61a6;hpb=17ab31afb5684076ec2c030811ec6e6363ba85ac;p=jalview.git diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java index 2d91a08..2dd5f26 100755 --- a/src/jalview/io/FeaturesFile.java +++ b/src/jalview/io/FeaturesFile.java @@ -74,8 +74,6 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI private static final String NOTE = "Note"; - protected static final String FRAME = "FRAME"; - protected static final String TAB = "\t"; protected static final String GFF_VERSION = "##gff-version"; @@ -1078,7 +1076,8 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI out.append(strand == 1 ? "+" : (strand == -1 ? "-" : ".")); out.append(TAB); - out.append(sf.getValue(FRAME, ".")); + String phase = sf.getPhase(); + out.append(phase == null ? "." : phase); // miscellaneous key-values (GFF column 9) String attributes = sf.getAttributes();