X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFeaturesFile.java;h=73783e5b408a0dac903dabe9d10d480626651a16;hb=2466e94aa67b0559bd5c4c6e17d60b6fac3cb756;hp=aa38540d559b7c09c2203f59dd0a6bfc59519789;hpb=bf0d052fef43e9809b7170dbfd372b3ea116391b;p=jalview.git diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java index aa38540..73783e5 100755 --- a/src/jalview/io/FeaturesFile.java +++ b/src/jalview/io/FeaturesFile.java @@ -138,8 +138,7 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI * @return true if features were added */ public boolean parse(AlignmentI align, - Map colours, - boolean removeHTML) + Map colours, boolean removeHTML) { return parse(align, colours, removeHTML, false); } @@ -176,8 +175,8 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI * @return true if features were added */ public boolean parse(AlignmentI align, - Map colours, - boolean removeHTML, boolean relaxedIdmatching) + Map colours, boolean removeHTML, + boolean relaxedIdmatching) { Map gffProps = new HashMap(); /* @@ -587,7 +586,8 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI { for (SequenceFeature sequenceFeature : features) { - isnonpos = sequenceFeature.begin == 0 && sequenceFeature.end == 0; + isnonpos = sequenceFeature.begin == 0 + && sequenceFeature.end == 0; if ((!nonpos && isnonpos) || (!isnonpos && visOnly && !visible .containsKey(sequenceFeature.type)))