X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFileFormats.java;h=de83e9bb06507e2300f6a97f6edb26888090e71d;hb=ae91bd2b6c74d4b6267d0df5670db7207707130b;hp=158489e27f8224b481ee2b72d5b9c492485e3790;hpb=6a39c322e12aa5b9a14e240e19df8d6be814e594;p=jalview.git

diff --git a/src/jalview/io/FileFormats.java b/src/jalview/io/FileFormats.java
index 158489e..de83e9b 100644
--- a/src/jalview/io/FileFormats.java
+++ b/src/jalview/io/FileFormats.java
@@ -1,9 +1,30 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.io;
 
 import java.util.ArrayList;
 import java.util.HashSet;
 import java.util.LinkedHashMap;
 import java.util.List;
+import java.util.Locale;
 import java.util.Map;
 import java.util.Set;
 
@@ -74,13 +95,15 @@ public class FileFormats
    */
   public void registerFileFormat(FileFormatI format)
   {
-    registerFileFormat(format, false);
+    boolean isIdentifiable = format instanceof FileFormat
+            && ((FileFormat) format).isIdentifiable();
+    registerFileFormat(format, isIdentifiable);
   }
 
   protected void registerFileFormat(FileFormatI format,
           boolean isIdentifiable)
   {
-    String name = format.getName().toUpperCase();
+    String name = format.getName().toUpperCase(Locale.ROOT);
     if (formats.containsKey(name))
     {
       System.err.println("Overwriting file format: " + format.getName());
@@ -99,7 +122,7 @@ public class FileFormats
    */
   public void deregisterFileFormat(String name)
   {
-    FileFormatI ff = formats.remove(name.toUpperCase());
+    FileFormatI ff = formats.remove(name.toUpperCase(Locale.ROOT));
     identifiable.remove(ff);
   }
 
@@ -152,7 +175,7 @@ public class FileFormats
    */
   public FileFormatI forName(String format)
   {
-    return format == null ? null : formats.get(format.toUpperCase());
+    return format == null ? null : formats.get(format.toUpperCase(Locale.ROOT));
   }
 
   /**