X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFileLoader.java;h=449c68577b21249f9f4d3ee763b61b3b9e5697b9;hb=a7bc89415a6749ff89eb97f75fbc950a433a4935;hp=5d290b65cc6d65d04e736ec76799f0d94b3f6deb;hpb=140b350c1bb78f0d6b46f9fcbfc523a05c32beba;p=jalview.git

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index 5d290b6..449c685 100755
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -273,6 +273,7 @@ public class FileLoader implements Runnable
             ? "Copied From Clipboard"
             : file;
     Runtime rt = Runtime.getRuntime();
+
     try
     {
       if (Desktop.instance != null)
@@ -380,12 +381,12 @@ public class FileLoader implements Runnable
             {
               if (selectedFile == null)
               {
-                al = fa.readFile(file, protocol, format);
+                al = fa.readFile(null, file, protocol, format);
 
               }
               else
               {
-                al = fa.readFile(selectedFile, protocol, format);
+                al = fa.readFile(selectedFile, null, protocol, format);
               }
               source = fa.getAlignFile(); // keep reference for later if
 
@@ -486,6 +487,12 @@ public class FileLoader implements Runnable
               // that perform queries to find the 'current working alignment'
               Desktop.addInternalFrame(alignFrame, title,
                       AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
+
+              /*
+               * for an Overview automatically opened with alignment,
+               * set its title now alignFrame title has been set
+               */
+              alignFrame.alignPanel.setOverviewTitle(alignFrame);
             }
 
             try