X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFileLoader.java;h=4ec464a060ed13f0a27b2524e02f5067347d5e5c;hb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;hp=199486500ebba3fa17fd00fdd0d6445b01ae734b;hpb=0e2054d29bc49351f000d478659dc3c4371b251c;p=jalview.git

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index 1994865..4ec464a 100755
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.io;
@@ -305,7 +307,7 @@ public class FileLoader implements Runnable
             error = format + "\n" + error;
           }
         }
-        
+
         if ((al != null) && (al.getHeight() > 0))
         {
           if (viewport != null)
@@ -324,15 +326,19 @@ public class FileLoader implements Runnable
             alignFrame = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH,
                     AlignFrame.DEFAULT_HEIGHT);
 
-            alignFrame.statusBar.setText(MessageManager.formatMessage("label.successfully_loaded_file", new String[]{title}));
+            alignFrame.statusBar.setText(MessageManager.formatMessage(
+                    "label.successfully_loaded_file", new String[]
+                    { title }));
 
             if (!protocol.equals(AppletFormatAdapter.PASTE))
               alignFrame.setFileName(file, format);
             if (raiseGUI)
             {
               // add the window to the GUI
-              // note - this actually should happen regardless of raiseGUI status in Jalview 3
-              // TODO: define 'virtual desktop' for benefit of headless scripts that perform queries to find the 'current working alignment'
+              // note - this actually should happen regardless of raiseGUI
+              // status in Jalview 3
+              // TODO: define 'virtual desktop' for benefit of headless scripts
+              // that perform queries to find the 'current working alignment'
               Desktop.addInternalFrame(alignFrame, title,
                       AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
             }
@@ -362,7 +368,8 @@ public class FileLoader implements Runnable
               public void run()
               {
                 JOptionPane.showInternalMessageDialog(Desktop.desktop,
-                        errorMessage, MessageManager.getString("label.error_loading_file"),
+                        errorMessage, MessageManager
+                                .getString("label.error_loading_file"),
                         JOptionPane.WARNING_MESSAGE);
               }
             });
@@ -387,8 +394,10 @@ public class FileLoader implements Runnable
           public void run()
           {
             javax.swing.JOptionPane.showInternalMessageDialog(
-                    Desktop.desktop, MessageManager.formatMessage("label.problems_opening_file", new String[]{file}),
-                    MessageManager.getString("label.file_open_error"),
+                    Desktop.desktop, MessageManager.formatMessage(
+                            "label.problems_opening_file", new String[]
+                            { file }), MessageManager
+                            .getString("label.file_open_error"),
                     javax.swing.JOptionPane.WARNING_MESSAGE);
           }
         });