X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFileLoader.java;h=d744fae723bdb5a568c8c189afeac3159c797a45;hb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;hp=df6470255234613285f2b6a17ecbd3e682c26597;hpb=cfb79b69d9fa44595560659bd95d1d1cd27677ad;p=jalview.git

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index df64702..d744fae 100755
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -52,11 +52,9 @@ import jalview.ws.utils.UrlDownloadClient;
 
 import java.util.ArrayList;
 import java.util.List;
-
 public class FileLoader implements Runnable
 {
   private static final String TAB = "\t";
-
   String file;
 
   DataSourceType protocol;
@@ -249,7 +247,6 @@ public class FileLoader implements Runnable
     {
       return null;
     }
-
     String propertyName = sourceType == DataSourceType.FILE ? "RECENT_FILE"
             : "RECENT_URL";
     String historyItems = Cache.getProperty(propertyName);
@@ -446,6 +443,7 @@ public class FileLoader implements Runnable
                   .getFeatureColourScheme();
           if (viewport != null)
           {
+            // TODO: test if this needs to be done after addAlignment ? (like in 2.11.2)  
             if (proxyColourScheme != null)
             {
               viewport.applyFeaturesStyle(proxyColourScheme);