X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFileParse.java;h=af3bbeca10db20c4b1f5fa044a8d78089d517ab0;hb=ca05d2959da096c30276df437bc24fcf9dc5adb6;hp=ea86ae08eaf81ad426bd7b0640834b53ce9be8bb;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git

diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java
index ea86ae0..af3bbec 100755
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -1,65 +1,72 @@
 /*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package jalview.io;
 
 import java.io.*;
 import java.net.*;
 
-public class FileParse {
-
-  public File   inFile;
-  public int    fileSize;
-  public int    noLines;
-
-  protected String          type;
+public class FileParse
+{
+  public File inFile;
+  public int fileSize;
+  public int noLines;
+  protected String type;
   protected BufferedReader dataIn;
 
-  public FileParse() {}
-
-  public FileParse(String fileStr, String type) throws MalformedURLException, IOException
+  public FileParse()
   {
+  }
 
+  public FileParse(String fileStr, String type)
+      throws MalformedURLException, IOException
+  {
     this.type = type;
 
-    if (type.equals("File")) {
+    if (type.equals("File"))
+    {
       this.inFile = new File(fileStr);
-      this.fileSize = (int)inFile.length();
-
-      dataIn = new BufferedReader(new FileReader( fileStr ));
+      this.fileSize = (int) inFile.length();
 
-    } else if (type.equals("URL")) {
+      dataIn = new BufferedReader(new FileReader(fileStr));
+    }
+    else if (type.equals("URL"))
+    {
       URL url = new URL(fileStr);
       this.fileSize = 0;
-      dataIn = new BufferedReader(new InputStreamReader( url.openStream() ));
-    } else if(type.equals("Paste"))
+      dataIn = new BufferedReader(new InputStreamReader(url.openStream()));
+    }
+    else if (type.equals("Paste"))
     {
       dataIn = new BufferedReader(new StringReader(fileStr));
     }
   }
 
-  public String nextLine() throws IOException {
+  public String nextLine()
+      throws IOException
+  {
     String next = dataIn.readLine();
-    if (next != null) {
+
+    if (next != null)
+    {
       noLines++;
     }
+
     return next;
   }
-
 }