X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFormatAdapter.java;h=15d4dc3ce87dae93a7dd779b7fef60c6b586fad6;hb=dd74fc4938723fe5ec48d4e5fdcfbe58ac42a48d;hp=84940a8b88c936537c29c13875f15e33d062e7d3;hpb=99792d48de35bb2d0e2017871fa44da1c3be38a2;p=jalview.git

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 84940a8..15d4dc3 100755
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -36,10 +36,15 @@ public class FormatAdapter extends AppletFormatAdapter
     {
       if(omitHiddenColumns!=null)
       {
+        SequenceI [] tmp = new SequenceI[seqs.length];
         for(int i=0; i<seqs.length; i++)
-          seqs [i] = new Sequence(
+        {
+          tmp[i] = new Sequence(
               seqs[i].getName(), omitHiddenColumns[i],
               seqs[i].getStart(), seqs[i].getEnd());
+          tmp[i].setDescription(seqs[i].getDescription());
+        }
+        seqs = tmp;
       }
 
       return formatSequences(format, seqs);