X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFormatAdapter.java;h=61c2331465e952492f73174cc456fff1376a5ac3;hb=04b6d995eb9395cb4107b28119fff413d8bacafd;hp=18bf76a022f81a538377cf36ecb6eb928227f842;hpb=9f91d904d3f77d7e60603722eae252cee9586a60;p=jalview.git

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 18bf76a..61c2331 100755
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -45,6 +45,8 @@ public class FormatAdapter
         formats.addElement("PFAM");
     }
 
+    AlignFile afile = null;
+
     /**
      * DOCUMENT ME!
      *
@@ -54,12 +56,10 @@ public class FormatAdapter
      *
      * @return DOCUMENT ME!
      */
-    public static SequenceI[] readFile(String inFile, String type, String format)
+    public SequenceI[] readFile(String inFile, String type, String format)
     {
         try
         {
-            AlignFile afile = null;
-
             if (format.equals("FASTA"))
             {
                 afile = new FastaFile(inFile, type);
@@ -101,6 +101,7 @@ public class FormatAdapter
         return null;
     }
 
+
     /**
      * DOCUMENT ME!
      *
@@ -109,7 +110,7 @@ public class FormatAdapter
      *
      * @return DOCUMENT ME!
      */
-    public static String formatSequences(String format, Vector seqs)
+    public String formatSequences(String format, Vector seqs)
     {
         SequenceI[] s = new SequenceI[seqs.size()];