X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFormatAdapter.java;h=61c2331465e952492f73174cc456fff1376a5ac3;hb=acbb69521cbe230ab33b922f45329d21a95dc410;hp=6ac110d47e041b89534ff1b4f278f0f3bb8ec759;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 6ac110d..61c2331 100755
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -32,7 +32,7 @@ import java.util.Vector;
 public class FormatAdapter
 {
     /** DOCUMENT ME!! */
-    public static Vector formats = new Vector();
+    public static final Vector formats = new Vector();
 
     static
     {
@@ -45,6 +45,8 @@ public class FormatAdapter
         formats.addElement("PFAM");
     }
 
+    AlignFile afile = null;
+
     /**
      * DOCUMENT ME!
      *
@@ -54,12 +56,10 @@ public class FormatAdapter
      *
      * @return DOCUMENT ME!
      */
-    public static SequenceI[] readFile(String inFile, String type, String format)
+    public SequenceI[] readFile(String inFile, String type, String format)
     {
         try
         {
-            AlignFile afile = null;
-
             if (format.equals("FASTA"))
             {
                 afile = new FastaFile(inFile, type);
@@ -101,6 +101,7 @@ public class FormatAdapter
         return null;
     }
 
+
     /**
      * DOCUMENT ME!
      *
@@ -109,7 +110,7 @@ public class FormatAdapter
      *
      * @return DOCUMENT ME!
      */
-    public static String formatSequences(String format, Vector seqs)
+    public String formatSequences(String format, Vector seqs)
     {
         SequenceI[] s = new SequenceI[seqs.size()];