X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFormatAdapter.java;h=735619f4b29adf16797f0fe0c5cc7ff1026b7b3e;hb=0980e87380e2922790d01bde3f616115f1916a43;hp=00920db96d40f53de3bdb14ec1a8d396e5c29f57;hpb=a1984b1c8c273ed33c7ce9283039f4027dcae2de;p=jalview.git diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java index 00920db..735619f 100755 --- a/src/jalview/io/FormatAdapter.java +++ b/src/jalview/io/FormatAdapter.java @@ -67,12 +67,9 @@ public class FormatAdapter extends AppletFormatAdapter { if (Cache.getDefault("STRUCT_FROM_PDB", true)) { - annotFromStructure = Cache.getDefault("ADD_TEMPFACT_ANN", - true); - localSecondaryStruct = Cache.getDefault("ADD_SS_ANN", - true); - serviceSecondaryStruct = Cache.getDefault("USE_RNAVIEW", - true); + annotFromStructure = Cache.getDefault("ADD_TEMPFACT_ANN", true); + localSecondaryStruct = Cache.getDefault("ADD_SS_ANN", true); + serviceSecondaryStruct = Cache.getDefault("USE_RNAVIEW", true); } else { @@ -164,8 +161,8 @@ public class FormatAdapter extends AppletFormatAdapter public boolean getCacheSuffixDefault(FileFormatI format) { - return Cache.getDefault(format.getName().toUpperCase(Locale.ROOT) + "_JVSUFFIX", - true); + return Cache.getDefault( + format.getName().toUpperCase(Locale.ROOT) + "_JVSUFFIX", true); } public String formatSequences(FileFormatI format, AlignmentI alignment,