X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFormatAdapter.java;h=7c117b900b9996c8c9e7c329158033d5825e6c36;hb=b005d2429ec2b467aaf18318336842dc4c292b76;hp=86ec140e717778faf447f8e1ffb1dfa357b90d81;hpb=581e7e5a0736b3b5e5ade54656c194b399b2a3ec;p=jalview.git

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 86ec140..7c117b9 100755
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -37,10 +37,20 @@ import jalview.datamodel.SequenceI;
  */
 public class FormatAdapter extends AppletFormatAdapter
 {
+  public FormatAdapter(AlignViewportI viewport)
+  {
+    super(viewport);
+    init();
+  }
 
   public FormatAdapter()
   {
     super();
+    init();
+  }
+
+  private void init()
+  {
     if (jalview.bin.Cache.getDefault("STRUCT_FROM_PDB", true))
     {
       annotFromStructure = jalview.bin.Cache.getDefault("ADD_TEMPFACT_ANN",
@@ -58,6 +68,7 @@ public class FormatAdapter extends AppletFormatAdapter
       serviceSecondaryStruct = false;
     }
   }
+
   public String formatSequences(String format, SequenceI[] seqs,
           String[] omitHiddenColumns)
   {