X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFormatAdapter.java;h=d6e67677b522f248344f9da41d6598004fd02014;hb=d4271d32477e99e9fbbfa5db3e11f1b79324e60d;hp=735619f4b29adf16797f0fe0c5cc7ff1026b7b3e;hpb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;p=jalview.git

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 735619f..d6e6767 100755
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -20,6 +20,8 @@
  */
 package jalview.io;
 
+import java.io.File;
+import java.io.IOException;
 import java.util.Locale;
 
 import jalview.api.AlignExportSettingsI;
@@ -32,11 +34,10 @@ import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.structure.StructureImportSettings;
+import jalview.structure.StructureImportSettings.TFType;
 import jalview.util.Comparison;
 
-import java.io.File;
-import java.io.IOException;
-
 /**
  * Additional formatting methods used by the application in a number of places.
  * 
@@ -228,6 +229,16 @@ public class FormatAdapter extends AppletFormatAdapter
   }
 
   @Override
+  public AlignmentI readFile(File selectedFile, String file,
+          DataSourceType sourceType, FileFormatI fileFormat,
+          StructureImportSettings.TFType tempfacType) throws IOException
+  {
+    AlignmentI al = super.readFile(selectedFile, file, sourceType,
+            fileFormat, tempfacType);
+    return al;
+  }
+
+  @Override
   public AlignmentI readFile(String file, DataSourceType sourceType,
           FileFormatI fileFormat) throws IOException
   {