X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FGff3File.java;h=4d8ea94ef34b5903a0487699f5bb96f629c05325;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=53179e07aa36fac7e15ab127481bd204c421b247;hpb=d8b1bd1058a11fca0c2ea91845bc08cbf5151323;p=jalview.git
diff --git a/src/jalview/io/Gff3File.java b/src/jalview/io/Gff3File.java
index 53179e0..4d8ea94 100644
--- a/src/jalview/io/Gff3File.java
+++ b/src/jalview/io/Gff3File.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.io;
import jalview.api.AlignViewportI;
@@ -100,6 +120,7 @@ public class Gff3File extends FeaturesFile
AlignmentI dataset;
List alignments;
+
@Override
public void parse()
{
@@ -118,8 +139,7 @@ public class Gff3File extends FeaturesFile
}
else
{
- dataset = new Alignment(new SequenceI[]
- {});
+ dataset = new Alignment(new SequenceI[] {});
}
boolean parseResult = parse(dataset, null, null, false, true);
@@ -139,7 +159,7 @@ public class Gff3File extends FeaturesFile
}
@Override
- public void addProperties(Alignment al)
+ public void addProperties(AlignmentI al)
{
super.addProperties(al);
if (dataset.getCodonFrames() != null)