X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FHTMLOutput.java;h=201ff0c85b0457ff6daa2a0bad9d9640e8797ba5;hb=b9926a366ae75eb28250166fba939d2f9bcf185f;hp=e4dc83e9d35912535e26518c3aeba827f38e93e3;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git

diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index e4dc83e..201ff0c 100755
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -114,9 +114,6 @@ public class HTMLOutput
     SequenceI seq;
     ColourSchemeI cs = null;
     AlignmentI alignment = av.getAlignment();
-    String r;
-    String g;
-    String b;
 
     // draws the top row, the measure rule
     out.println("<tr><td colspan=\"6\"></td>");
@@ -205,9 +202,9 @@ public class HTMLOutput
         "<table border=\"0\"  cellpadding=\"0\" cellspacing=\"0\">\n");
 
     for (int startRes = 0; startRes < al.getWidth();
-         startRes += av.getChunkWidth())
+         startRes += av.getWrappedWidth())
     {
-      int endRes = startRes + av.getChunkWidth();
+      int endRes = startRes + av.getWrappedWidth();
 
       if (endRes > al.getWidth())
       {