X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FHTMLOutput.java;h=77006db33573e9bd5b0eecdf62c319dc6fcc8c55;hb=4cb8a2457311f8f01339eb80430a09b702c8fd62;hp=68f3e2c0d1280c1516daa099d137e85998cd7bea;hpb=8b844f70b97629d597be49cb6ac0d83c8da007c9;p=jalview.git

diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index 68f3e2c..77006db 100755
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -91,8 +91,8 @@ public abstract class HTMLOutput implements Runnable
     String bioJSON = new FormatAdapter(ap, exportData.getSettings())
             .formatSequences(FileFormat.Json, exportData.getAlignment(),
                     exportData.getOmitHidden(), exportData
-                            .getStartEndPostions(), ap.getAlignViewport()
-                            .getColumnSelection());
+.getStartEndPostions(), ap.getAlignViewport()
+                            .getAlignment().getHiddenColumns());
     return bioJSON;
   }