X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FHTMLOutput.java;h=d676deadf532b8ab38fc49733ec7812bca6b9431;hb=6a698ae1f2a42d84b287f3095a9244c711e0ce2e;hp=beb88293300e55c1db2a0cb1c9727a511d9d77e7;hpb=55e2e9b22b133db8b9ff0979b0338a33081fc8fd;p=jalview.git

diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index beb8829..d676dea 100755
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -32,11 +32,13 @@ public class HTMLOutput
   FeatureRenderer fr;
   Color color;
 
-  public HTMLOutput(AlignViewport av, SequenceRenderer sr, FeatureRenderer fr)
+  public HTMLOutput(AlignViewport av, SequenceRenderer sr, FeatureRenderer fr1)
   {
     this.av = av;
     this.sr = sr;
-    this.fr = fr;
+
+    fr = new FeatureRenderer(av);
+    fr.transferSettings(fr1);
 
     JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.
         getProperty(