X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FHTMLOutput.java;h=fd51823c9277734de36dd88550ef599f111df726;hb=06fef82a8d6fcdcfadc58d747f9f774297cd639d;hp=af894e013b8b69ec5a84c20dc3ff9bddcbb38c55;hpb=3f578998521236c208e9d3c7790d4d5ac4da0a50;p=jalview.git

diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index af894e0..fd51823 100755
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -19,7 +19,9 @@ public class HTMLOutput
   {
     this.av = av;
     sr = new SequenceRenderer(av);
-    JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
+    JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY")
+        , new String[]{"html"}, "HTML files");
+
     chooser.setFileView(new JalviewFileView());
     chooser.setDialogTitle("Save as HTML");
     chooser.setToolTipText("Save");
@@ -90,7 +92,11 @@ public class HTMLOutput
     {
       seq = alignment.getSequenceAt(i);
       groups = alignment.findAllGroups( seq );
-      out.println("<tr><td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+      if(av.getShowFullId())
+        out.println("<tr><td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+      else
+        out.println("<tr><td nowrap>"+seq.getName()+"&nbsp;&nbsp;</td>");
+
 
 
       for (int res = 0; res < seq.getLength(); res++)
@@ -172,7 +178,10 @@ public class HTMLOutput
          out.println("<tr>");
          seq = al.getSequenceAt(s);
          groups = al.findAllGroups( seq );
-         out.println("<td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+         if(av.getShowFullId())
+           out.println("<td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+         else
+           out.println("<td nowrap>"+seq.getName()+"&nbsp;&nbsp;</td>");
 
          for (int res = startRes; res < endRes; res++)
               {