X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FHtmlFile.java;h=954d12e5dcd53207fcf36c8f5f1466ced038323f;hb=3fd32306db772b6d6756ca20d33519edeb353c2d;hp=dc14cc03916cf551c25bef3d03ad183a57c17aab;hpb=73d2eb017ebcaff4453d676c0d728f61015d102c;p=jalview.git

diff --git a/src/jalview/io/HtmlFile.java b/src/jalview/io/HtmlFile.java
index dc14cc0..954d12e 100644
--- a/src/jalview/io/HtmlFile.java
+++ b/src/jalview/io/HtmlFile.java
@@ -25,7 +25,6 @@ import jalview.api.ComplexAlignFile;
 import jalview.api.FeaturesDisplayedI;
 import jalview.datamodel.ColumnSelection;
 import jalview.datamodel.SequenceI;
-import jalview.schemes.ColourSchemeI;
 
 import java.io.IOException;
 import java.io.StringReader;
@@ -40,7 +39,7 @@ public class HtmlFile extends AlignFile implements ComplexAlignFile
 
   public static final String FILE_DESC = "HTML";
 
-  private ColourSchemeI colourScheme;
+  private String globalColourScheme;
 
   private boolean showSeqFeatures;
 
@@ -103,13 +102,12 @@ public class HtmlFile extends AlignFile implements ComplexAlignFile
         throw new IOException(errormessage);
       }
       JSONFile jsonFile = new JSONFile().parse(new StringReader(
-              contentFromDiv ? content.text() : content
-              .val()));
+              contentFromDiv ? content.text() : content.val()));
       this.seqs = jsonFile.getSeqs();
       this.seqGroups = jsonFile.getSeqGroups();
       this.annotations = jsonFile.getAnnotations();
       this.showSeqFeatures = jsonFile.isShowSeqFeatures();
-      this.colourScheme = jsonFile.getColourScheme();
+      this.globalColourScheme = jsonFile.getGlobalColourScheme();
       this.hiddenSequences = jsonFile.getHiddenSequences();
       this.columnSelection = jsonFile.getColumnSelection();
       this.displayedFeatures = jsonFile.getDisplayedFeatures();
@@ -119,7 +117,6 @@ public class HtmlFile extends AlignFile implements ComplexAlignFile
     }
   }
 
-
   @Override
   public String print()
   {
@@ -137,14 +134,14 @@ public class HtmlFile extends AlignFile implements ComplexAlignFile
     this.showSeqFeatures = showSeqFeatures;
   }
 
-  public ColourSchemeI getColourScheme()
+  public String getGlobalColourScheme()
   {
-    return colourScheme;
+    return globalColourScheme;
   }
 
-  public void setColourScheme(ColourSchemeI colourScheme)
+  public void setColourScheme(String globalColourScheme)
   {
-    this.colourScheme = colourScheme;
+    this.globalColourScheme = globalColourScheme;
   }
 
   public ColumnSelection getColumnSelection()