X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;h=01282ea1f353930f03d92ed64d728c30b8f7c401;hb=2202f8ba9f000c811358937a571c5cd4a017a403;hp=5d39383e193daf20e14fd9ce33da722210e468e2;hpb=e5e719a4db6db7d165261151d4638547923fa5d2;p=jalview.git

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 5d39383..01282ea 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -122,19 +122,31 @@ public class IdentifyFile
                     // could be BLC file, read next line to confirm
                     data = reader.readLine();
 
-                    if (data.indexOf(">") > -1 || data.indexOf("*") >-1 )
+                    if (data.indexOf(">") > -1)
                     {
                         reply = "BLC";
                     }
                     else
                     {
+                      //Is this a single line BLC file?
+                      reader.readLine();
+                      String data2 = reader.readLine();
+                      if ( data2 != null
+                           && data.indexOf("*")>-1
+                           && data.indexOf("*")==data2.indexOf("*"))
+                      {
+                        reply = "BLC";
+                      }
+                      else
+                      {
                         reply = "FASTA";
+                      }
                     }
 
                     break;
                   }
-                  else if (data.indexOf("HEADER") > -1 ||
-                           data.indexOf("ATOM") > -1)
+                  else if (data.indexOf("HEADER") == 0 ||
+                           data.indexOf("ATOM") == 0)
                   {
                     reply = "PDB";
                     break;