X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;h=18e1a6a2a340e3f92476231bbc9197c721dce431;hb=2ba9716bbffe4b35f640f8a85be4b60fe5fb2fdd;hp=2baf3231765b8b3fe90f3bebff534754917aaf6e;hpb=1ecf6419aba86993b3c223bf5ec0fa79427baf85;p=jalview.git

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 2baf323..18e1a6a 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -15,7 +15,7 @@ public class IdentifyFile
 {
   public static String Identify(String file, String protocol)
   {
-    String reply = "error";
+    String reply = "PFAM";
     try{
 
       BufferedReader reader = null;
@@ -56,23 +56,17 @@ public class IdentifyFile
           reply = "PIR";
           break;
         }
-        else if(data.indexOf(">")==0)
+        else if(data.indexOf(">")>-1)
         {
-          // could be BLC file
+          // could be BLC file, read next line to confirm
           data = reader.readLine();
-          if(data.indexOf(">")==0)
+          if(data.indexOf(">")>-1)
             reply = "BLC";
           else
             reply = "FASTA";
 
             break;
         }
-        else
-        {
-           reply = "PFAM";
-           break;
-         }
-
       }
       reader.close();
     }