X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;h=e97ec40941ff4061ce7e2718535ac750c08f29dc;hb=a7bec763a3e4f17a549115f8f9f19ee4c742c26b;hp=9a248e5abe40694c229844e40d6ec84c9e00889a;hpb=174230b4233d9ce80f94527768d2cd2f76da11ab;p=jalview.git

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 9a248e5..e97ec40 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -122,13 +122,25 @@ public class IdentifyFile
                     // could be BLC file, read next line to confirm
                     data = reader.readLine();
 
-                    if (data.indexOf(">") > -1 || data.indexOf("*") >-1 )
+                    if (data.indexOf(">") > -1)
                     {
                         reply = "BLC";
                     }
                     else
                     {
+                      //Is this a single line BLC file?
+                      reader.readLine();
+                      String data2 = reader.readLine();
+                      if ( data2 != null
+                           && data.indexOf("*")>-1
+                           && data.indexOf("*")==data2.indexOf("*"))
+                      {
+                        reply = "BLC";
+                      }
+                      else
+                      {
                         reply = "FASTA";
+                      }
                     }
 
                     break;