X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJPredClient.java;h=c463c5173a67cbbca66d757e5ff8fa312dc2dbe4;hb=06fef82a8d6fcdcfadc58d747f9f774297cd639d;hp=b5fd436fc67b8c3a3ac6e21a386cd004828997a7;hpb=0c5c3790f7e0a968455612a424270f46b3ab2599;p=jalview.git

diff --git a/src/jalview/io/JPredClient.java b/src/jalview/io/JPredClient.java
index b5fd436..c463c51 100755
--- a/src/jalview/io/JPredClient.java
+++ b/src/jalview/io/JPredClient.java
@@ -198,9 +198,9 @@ public class JPredClient
         if (this.msa!=null && result.getAligfile()!=null) {
           // we ignore the returned alignment if we only predicted on a single sequence
           String format = jalview.io.IdentifyFile.Identify(result.getAligfile(), "Paste");
-          if (jalview.io.FormatProperties.contains(format))
+          if (jalview.io.FormatAdapter.formats.contains(format))
           {
-            al = new Alignment(jalview.io.FormatAdapter.read(result.getAligfile(),"Paste",format));
+            al = new Alignment(jalview.io.FormatAdapter.readFile(result.getAligfile(),"Paste",format));
             noMsa = false;
             FirstSeq = 0;
           }