X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJPredFile.java;h=6af92b72ea9f9efc00d79559993981c4202ee48c;hb=9c127c47a7bf73c3e538815635f525fe59f7faba;hp=026c879173e81a0efdd9fd6ddd480db657202700;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index 026c879..6af92b7 100755
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -68,6 +68,8 @@ public class JPredFile extends AlignFile
   /**
    * Creates a new JPredFile object.
    * 
+   * BH allows File or String
+   * 
    * @param inFile
    *          DOCUMENT ME!
    * @param sourceType
@@ -76,7 +78,7 @@ public class JPredFile extends AlignFile
    * @throws IOException
    *           DOCUMENT ME!
    */
-  public JPredFile(String inFile, DataSourceType sourceType)
+  public JPredFile(Object inFile, DataSourceType sourceType)
           throws IOException
   {
     super(inFile, sourceType);
@@ -207,7 +209,7 @@ public class JPredFile extends AlignFile
           {
             ascore = symbols.nextToken();
 
-            Float score = new Float(ascore);
+            Float score = Float.valueOf(ascore);
             scores.addElement(score);
           }
 
@@ -283,7 +285,7 @@ public class JPredFile extends AlignFile
 
           seq_entries.addElement(newseq.toString());
           ids.addElement(id);
-          Symscores.put(id, new Integer(ids.size() - 1));
+          Symscores.put(id, Integer.valueOf(ids.size() - 1));
         }
       }
     }
@@ -361,10 +363,9 @@ public class JPredFile extends AlignFile
   }
 
   /**
-   * DOCUMENT ME!
    * 
    * @param args
-   *          DOCUMENT ME!
+   * @j2sIgnore
    */
   public static void main(String[] args)
   {