X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJPredFile.java;h=7daee5518c9c3a956f7322496d7516fc53335105;hb=257122218808f36ca2bb443d80738d50f8ae51d3;hp=6dcbccda39a4da2be16568335788aec274572f34;hpb=9862477ece665df66d95f54921796b8703cd7971;p=jalview.git

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index 6dcbccd..7daee55 100755
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -1,22 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * 
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
  * as published by the Free Software Foundation; either version 2
  * of the License, or (at your option) any later version.
- *
+ * 
  * This program is distributed in the hope that it will be useful,
  * but WITHOUT ANY WARRANTY; without even the implied warranty of
  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  * GNU General Public License for more details.
- *
+ * 
  * You should have received a copy of the GNU General Public License
  * along with this program; if not, write to the Free Software
  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
  */
-
 /**
  * PredFile.java
  * JalviewX / Vamsas Project
@@ -63,7 +62,10 @@ public class JPredFile
   {
     super(inFile, type);
   }
-
+  public JPredFile(FileParse source) throws IOException
+  {
+    super(source);
+  }
   /**
    * DOCUMENT ME!
    *
@@ -302,8 +304,7 @@ public class JPredFile
       } catch (Exception e)
       {
         tal = null;
-        IOException ex = new IOException("Couldn't parse concise annotation for prediction profile. ("+e.getMessage()+")");
-        ex.setStackTrace(e.getStackTrace());
+        IOException ex = new IOException("Couldn't parse concise annotation for prediction profile.\n"+e);
         throw ex;
       }
       this.annotations = new Vector();