X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJSONFile.java;h=103892562101abb68712ee2d1ed70921e62f28e1;hb=9b3219d225131af5a165553f206ebf8da304ee23;hp=9e94d917bd2047addd48f08a04039f25b494119d;hpb=6936b57e5469c796a998d661a7a07648832ccf70;p=jalview.git diff --git a/src/jalview/io/JSONFile.java b/src/jalview/io/JSONFile.java index 9e94d91..1038925 100644 --- a/src/jalview/io/JSONFile.java +++ b/src/jalview/io/JSONFile.java @@ -482,7 +482,6 @@ public class JSONFile extends AlignFile implements ComplexAlignFile seqMap.put(seqUniqueId, seq); } - parseFeatures(jsonSeqArray); for (Iterator seqGrpIter = seqGrpJsonArray.iterator(); seqGrpIter @@ -521,8 +520,7 @@ public class JSONFile extends AlignFile implements ComplexAlignFile } } SequenceGroup seqGrp = new SequenceGroup(grpSeqs, grpName, null, - displayBoxes, displayText, colourText, - startRes, endRes); + displayBoxes, displayText, colourText, startRes, endRes); seqGrp.cs = ColourSchemeMapper.getJalviewColourScheme(colourScheme, seqGrp); seqGrp.setShowNonconserved(showNonconserved); @@ -574,8 +572,7 @@ public class JSONFile extends AlignFile implements ComplexAlignFile .get("label").toString(), alAnnot.get("description") .toString(), annotations); alignAnnot.graph = (alAnnot.get("graphType") == null) ? 0 : Integer - .valueOf(alAnnot.get("graphType") - .toString()); + .valueOf(alAnnot.get("graphType").toString()); JSONObject diplaySettings = (JSONObject) alAnnot .get("annotationSettings");