X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJSONFile.java;h=7e7052f7be1ecf681d96155818e6f0a04b1a6d9d;hb=bc85369667c2665d81631e96f0701038f04f9bb3;hp=4e293dbe2a17366ff7534f9bbe228e45bdd757c4;hpb=384e43c561fbc2446923dd2ed227e2931a8ac406;p=jalview.git

diff --git a/src/jalview/io/JSONFile.java b/src/jalview/io/JSONFile.java
index 4e293db..7e7052f 100644
--- a/src/jalview/io/JSONFile.java
+++ b/src/jalview/io/JSONFile.java
@@ -374,7 +374,10 @@ public class JSONFile extends AlignFile implements ComplexAlignFile
       AlignmentAnnotationPojo alignAnnotPojo = new AlignmentAnnotationPojo();
       alignAnnotPojo.setDescription(annot.description);
       alignAnnotPojo.setLabel(annot.label);
-      alignAnnotPojo.setScore(annot.score);
+      if (!Double.isNaN(annot.score))
+      {
+        alignAnnotPojo.setScore(annot.score);
+      }
       alignAnnotPojo.setCalcId(annot.getCalcId());
       alignAnnotPojo.setGraphType(annot.graph);
 
@@ -528,11 +531,6 @@ public class JSONFile extends AlignFile implements ComplexAlignFile
               .hasNext();)
       {
         JSONObject alAnnot = alAnnotIter.next();
-        if (alAnnot == null)
-        {
-          continue;
-        }
-
         JSONArray annotJsonArray = (JSONArray) alAnnot.get("annotations");
         Annotation[] annotations = new Annotation[annotJsonArray.size()];
         int count = 0;