X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJalviewFileView.java;fp=src%2Fjalview%2Fio%2FJalviewFileView.java;h=03d7c59e3a58efc96d7b5f0ef55abfd21a06d4f8;hb=8134bbf710c92115deebb3649ecd21b5cb620ec7;hp=0dcc7c29830bbdcb1f89acfbaa30e5710d05691b;hpb=12197ebcf163ce652b2960d25b5094d3823ccc68;p=jalview.git

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index 0dcc7c2..03d7c59 100755
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -30,15 +30,23 @@ public class JalviewFileView extends FileView
 
   static
   {
+    // TODO: these names should come from the FormatAdapter lists for readable/writable extensions 
+    alignSuffix.put("amsa", "AMSA file");
     alignSuffix.put("fasta", "Fasta file");
     alignSuffix.put("fa", "Fasta file");
     alignSuffix.put("fastq", "Fasta file");
+    alignSuffix.put("mfa", "Fasta file");
     alignSuffix.put("blc", "BLC file");
     alignSuffix.put("msf", "MSF file");
     alignSuffix.put("pfam", "PFAM file");
     alignSuffix.put("aln", "Clustal file");
     alignSuffix.put("pir", "PIR file");
-    alignSuffix.put("jar", "Jalview file");
+    alignSuffix.put("jar", "Jalview Project file (old)");
+    alignSuffix.put("jvp", "Jalview Project file");
+    alignSuffix.put("amsa", "AMSA file");
+    alignSuffix.put("sto", "Stockholm File");
+    alignSuffix.put("stk", "Stockholm File");
+    alignSuffix.put("sto", "Stockholm File");
   }
 
   public String getTypeDescription(File f)