X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJalviewFileView.java;h=04189e17dd9d0cb59a4e4fedf92d789bcd2f8a2f;hb=3bff9f93376444b36ca6b69d30193e10ea3c07ab;hp=aa9d6f2a7ab4553dd78e7a84ebeed2f379fc5708;hpb=eb3ed0f2122c3b1e1248ae3203f7e3452fe45fd7;p=jalview.git

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index aa9d6f2..04189e1 100755
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,11 +1,47 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package jalview.io;
 
-import javax.swing.filechooser.FileView;
-import javax.swing.*;
 import java.io.*;
+import java.util.*;
+
+import javax.swing.*;
+import javax.swing.filechooser.*;
 
-public class JalviewFileView extends FileView
+public class JalviewFileView
+    extends FileView
 {
+  static Hashtable alignSuffix = new Hashtable();
+
+  static
+  {
+    alignSuffix.put("fasta", "Fasta file");
+    alignSuffix.put("fa", "Fasta file");
+    alignSuffix.put("fastq", "Fasta file");
+    alignSuffix.put("blc", "BLC file");
+    alignSuffix.put("msf", "MSF file");
+    alignSuffix.put("pfam", "PFAM file");
+    alignSuffix.put("aln", "Clustal file");
+    alignSuffix.put("pir", "PIR file");
+    alignSuffix.put("jar", "Jalview file");
+  }
+
   public String getTypeDescription(File f)
   {
     String extension = getExtension(f);
@@ -13,11 +49,12 @@ public class JalviewFileView extends FileView
 
     if (extension != null)
     {
-      if (extension.equals("fasta") || extension.equals("fa") || extension.equals("fastq"))
+      if (alignSuffix.containsKey(extension))
       {
-        type = "Fasta file";
+        type = alignSuffix.get(extension).toString();
       }
     }
+
     return type;
   }
 
@@ -28,40 +65,47 @@ public class JalviewFileView extends FileView
 
     if (extension != null)
     {
-      if (extension.equals("fasta") || extension.equals("fa") || extension.equals("fastq"))
+      if (alignSuffix.containsKey(extension))
       {
         icon = createImageIcon("/images/file.png");
       }
     }
+
     return icon;
   }
 
-
   /*
    * Get the extension of a file.
    */
-  public static String getExtension(File f) {
-      String ext = null;
-      String s = f.getName();
-      int i = s.lastIndexOf('.');
+  public static String getExtension(File f)
+  {
+    String ext = null;
+    String s = f.getName();
+    int i = s.lastIndexOf('.');
 
-      if (i > 0 &&  i < s.length() - 1) {
-          ext = s.substring(i+1).toLowerCase();
-      }
-      return ext;
-  }
+    if ( (i > 0) && (i < (s.length() - 1)))
+    {
+      ext = s.substring(i + 1).toLowerCase();
+    }
 
-  /** Returns an ImageIcon, or null if the path was invalid. */
-  protected static ImageIcon createImageIcon(String path) {
-      java.net.URL imgURL = JalviewFileView.class.getResource(path);
-      if (imgURL != null) {
-          return new ImageIcon(imgURL);
-      } else {
-          System.err.println("Couldn't find file: " + path);
-          return null;
-      }
+    return ext;
   }
 
-}
+  /** Returns an ImageIcon, or null if the path was invalid. */
+  protected static ImageIcon createImageIcon(String path)
+  {
+    java.net.URL imgURL = JalviewFileView.class.getResource(path);
 
+    if (imgURL != null)
+    {
+      return new ImageIcon(imgURL);
+    }
+    else
+    {
+      System.err.println(
+          "JalviewFileView.createImageIcon: Couldn't find file: " + path);
 
+      return null;
+    }
+  }
+}