X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJalviewFileView.java;h=4cef26df57dda9dfc61b1ebe5e830b519205f9cc;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=3c96a28fb335b38c51c3ff28c4141003ba079e64;hpb=e5127e5f27f02c8f328539eaac68eabfbee1d135;p=jalview.git

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index 3c96a28..4cef26d 100755
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,79 +1,123 @@
-package jalview.io;
-
-import javax.swing.filechooser.FileView;
-import javax.swing.*;
-import java.io.*;
-import java.util.*;
-
-public class JalviewFileView extends FileView
-{
-  static Hashtable alignSuffix = new Hashtable();
-  static{
-    alignSuffix.put("fasta", "Fasta file");
-    alignSuffix.put("fa", "Fasta file");
-    alignSuffix.put("fastq", "Fasta file");
-    alignSuffix.put("blc", "BLC file");
-    alignSuffix.put("msf", "MSF file");
-    alignSuffix.put("pfam", "PFAM file");
-    alignSuffix.put("aln", "Clustal file");
-    alignSuffix.put("pir", "PIR file");
-  }
-  public String getTypeDescription(File f)
-  {
-    String extension = getExtension(f);
-    String type = null;
-
-    if (extension != null)
-    {
-      if (alignSuffix.containsKey(extension))
-      {
-        type = alignSuffix.get(extension).toString();
-      }
-    }
-    return type;
-  }
-
-  public Icon getIcon(File f)
-  {
-    String extension = getExtension(f);
-    Icon icon = null;
-
-    if (extension != null)
-    {
-      if (alignSuffix.containsKey(extension))
-      {
-        icon = createImageIcon("/images/file.png");
-      }
-    }
-    return icon;
-  }
-
-
-  /*
-   * Get the extension of a file.
-   */
-  public static String getExtension(File f) {
-      String ext = null;
-      String s = f.getName();
-      int i = s.lastIndexOf('.');
-
-      if (i > 0 &&  i < s.length() - 1) {
-          ext = s.substring(i+1).toLowerCase();
-      }
-      return ext;
-  }
-
-  /** Returns an ImageIcon, or null if the path was invalid. */
-  protected static ImageIcon createImageIcon(String path) {
-      java.net.URL imgURL = JalviewFileView.class.getResource(path);
-      if (imgURL != null) {
-          return new ImageIcon(imgURL);
-      } else {
-          System.err.println("JalviewFileView.createImageIcon: Couldn't find file: " + path);
-          return null;
-      }
-  }
-
-}
-
-
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.io;
+
+import java.io.File;
+import java.util.Hashtable;
+
+import javax.swing.Icon;
+import javax.swing.ImageIcon;
+import javax.swing.filechooser.FileView;
+
+public class JalviewFileView extends FileView
+{
+  static Hashtable alignSuffix = new Hashtable();
+
+  static
+  {
+    // TODO: these names should come from the FormatAdapter lists for
+    // readable/writable extensions
+    alignSuffix.put("amsa", "AMSA file");
+    alignSuffix.put("fasta", "Fasta file");
+    alignSuffix.put("fa", "Fasta file");
+    alignSuffix.put("fastq", "Fasta file");
+    alignSuffix.put("mfa", "Fasta file");
+    alignSuffix.put("blc", "BLC file");
+    alignSuffix.put("msf", "MSF file");
+    alignSuffix.put("pfam", "PFAM file");
+    alignSuffix.put("aln", "Clustal file");
+    alignSuffix.put("pir", "PIR file");
+    alignSuffix.put("jar", "Jalview Project file (old)");
+    alignSuffix.put("jvp", "Jalview Project file");
+    alignSuffix.put("amsa", "AMSA file");
+    alignSuffix.put("sto", "Stockholm File");
+    alignSuffix.put("stk", "Stockholm File");
+    alignSuffix.put("sto", "Stockholm File");
+  }
+
+  public String getTypeDescription(File f)
+  {
+    String extension = getExtension(f);
+    String type = null;
+
+    if (extension != null)
+    {
+      if (alignSuffix.containsKey(extension))
+      {
+        type = alignSuffix.get(extension).toString();
+      }
+    }
+
+    return type;
+  }
+
+  public Icon getIcon(File f)
+  {
+    String extension = getExtension(f);
+    Icon icon = null;
+
+    if (extension != null)
+    {
+      if (alignSuffix.containsKey(extension))
+      {
+        icon = createImageIcon("/images/file.png");
+      }
+    }
+
+    return icon;
+  }
+
+  /*
+   * Get the extension of a file.
+   */
+  public static String getExtension(File f)
+  {
+    String ext = null;
+    String s = f.getName();
+    int i = s.lastIndexOf('.');
+
+    if ((i > 0) && (i < (s.length() - 1)))
+    {
+      ext = s.substring(i + 1).toLowerCase();
+    }
+
+    return ext;
+  }
+
+  /** Returns an ImageIcon, or null if the path was invalid. */
+  protected static ImageIcon createImageIcon(String path)
+  {
+    java.net.URL imgURL = JalviewFileView.class.getResource(path);
+
+    if (imgURL != null)
+    {
+      return new ImageIcon(imgURL);
+    }
+    else
+    {
+      System.err
+              .println("JalviewFileView.createImageIcon: Couldn't find file: "
+                      + path);
+
+      return null;
+    }
+  }
+}