X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJalviewFileView.java;h=65581c354e5632ea0724f15ea8439e11eee88836;hb=99ece0eec17dfa6afa515adb441f280a2fcf26cc;hp=7f360c8a5b69a573ae57170e5cdbb3c494a8dbf7;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index 7f360c8..65581c3 100755
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,19 +1,22 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.io;
@@ -29,15 +32,24 @@ public class JalviewFileView extends FileView
static
{
+ // TODO: these names should come from the FormatAdapter lists for
+ // readable/writable extensions
+ alignSuffix.put("amsa", "AMSA file");
alignSuffix.put("fasta", "Fasta file");
alignSuffix.put("fa", "Fasta file");
alignSuffix.put("fastq", "Fasta file");
+ alignSuffix.put("mfa", "Fasta file");
alignSuffix.put("blc", "BLC file");
alignSuffix.put("msf", "MSF file");
alignSuffix.put("pfam", "PFAM file");
alignSuffix.put("aln", "Clustal file");
alignSuffix.put("pir", "PIR file");
- alignSuffix.put("jar", "Jalview file");
+ alignSuffix.put("jar", "Jalview Project file (old)");
+ alignSuffix.put("jvp", "Jalview Project file");
+ alignSuffix.put("amsa", "AMSA file");
+ alignSuffix.put("sto", "Stockholm File");
+ alignSuffix.put("stk", "Stockholm File");
+ alignSuffix.put("sto", "Stockholm File");
}
public String getTypeDescription(File f)