X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJalviewFileView.java;h=65581c354e5632ea0724f15ea8439e11eee88836;hb=dd41808ee328f03b297334934937e86546be0fd0;hp=0dcc7c29830bbdcb1f89acfbaa30e5710d05691b;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index 0dcc7c2..65581c3 100755
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.io;
@@ -30,15 +32,24 @@ public class JalviewFileView extends FileView
 
   static
   {
+    // TODO: these names should come from the FormatAdapter lists for
+    // readable/writable extensions
+    alignSuffix.put("amsa", "AMSA file");
     alignSuffix.put("fasta", "Fasta file");
     alignSuffix.put("fa", "Fasta file");
     alignSuffix.put("fastq", "Fasta file");
+    alignSuffix.put("mfa", "Fasta file");
     alignSuffix.put("blc", "BLC file");
     alignSuffix.put("msf", "MSF file");
     alignSuffix.put("pfam", "PFAM file");
     alignSuffix.put("aln", "Clustal file");
     alignSuffix.put("pir", "PIR file");
-    alignSuffix.put("jar", "Jalview file");
+    alignSuffix.put("jar", "Jalview Project file (old)");
+    alignSuffix.put("jvp", "Jalview Project file");
+    alignSuffix.put("amsa", "AMSA file");
+    alignSuffix.put("sto", "Stockholm File");
+    alignSuffix.put("stk", "Stockholm File");
+    alignSuffix.put("sto", "Stockholm File");
   }
 
   public String getTypeDescription(File f)