X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJalviewFileView.java;h=6609f38f5d6930aec531ab35751dc8929b6351eb;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=27c6a073b0af267ae26103e888ffcd067e1db192;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index 27c6a07..6609f38 100755
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -30,15 +30,23 @@ public class JalviewFileView extends FileView
 
   static
   {
+    // TODO: these names should come from the FormatAdapter lists for readable/writable extensions 
+    alignSuffix.put("amsa", "AMSA file");
     alignSuffix.put("fasta", "Fasta file");
     alignSuffix.put("fa", "Fasta file");
     alignSuffix.put("fastq", "Fasta file");
+    alignSuffix.put("mfa", "Fasta file");
     alignSuffix.put("blc", "BLC file");
     alignSuffix.put("msf", "MSF file");
     alignSuffix.put("pfam", "PFAM file");
     alignSuffix.put("aln", "Clustal file");
     alignSuffix.put("pir", "PIR file");
-    alignSuffix.put("jar", "Jalview file");
+    alignSuffix.put("jar", "Jalview Project file (old)");
+    alignSuffix.put("jvp", "Jalview Project file");
+    alignSuffix.put("amsa", "AMSA file");
+    alignSuffix.put("sto", "Stockholm File");
+    alignSuffix.put("stk", "Stockholm File");
+    alignSuffix.put("sto", "Stockholm File");
   }
 
   public String getTypeDescription(File f)