X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJnetAnnotationMaker.java;h=60c0a68837dbef4083371d65332450d3d63c5498;hb=4f24ef0848cf3c43ba0467f31fce1baa5c57aad5;hp=9a397d7597c3c02c1c799c89362d79825b12cf20;hpb=a665055e234b20c818820bddedf203b7fd138252;p=jalview.git

diff --git a/src/jalview/io/JnetAnnotationMaker.java b/src/jalview/io/JnetAnnotationMaker.java
index 9a397d7..60c0a68 100755
--- a/src/jalview/io/JnetAnnotationMaker.java
+++ b/src/jalview/io/JnetAnnotationMaker.java
@@ -22,6 +22,8 @@ public class JnetAnnotationMaker
   {
     int i = 0;
     SequenceI[] preds = prediction.getSeqsAsArray();
+    // in the future we could search for the query
+    // sequence in the alignment before calling this function.
     SequenceI seqRef = al.getSequenceAt(FirstSeq);
     int width = preds[0].getSequence().length();
     int[] gapmap = al.getSequenceAt(FirstSeq).gapMap();
@@ -61,8 +63,8 @@ public class JnetAnnotationMaker
         {
           for (int j = 0; j < width; j++)
           {
-            float value = Float.parseFloat(preds[i].getCharAt(
-                j) + "");
+            float value = new Float(preds[i].getCharAt(
+                j) + "").floatValue();
             annotations[gapmap[j]] = new Annotation(preds[i].getCharAt(
                 j) + "", "", preds[i].getCharAt(j),
                 value);