X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FMSFfile.java;h=158feb9c03649918bb46e7a3316ce44dbf80adfa;hb=5022579ec6cc4eecfabd9df69e0fb039e3186a0a;hp=df2bed2a185239ae054549dca4dd7d3ad3b9c7d0;hpb=be762d8d9c71a7aa3121e845c45911c7192b7827;p=jalview.git

diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index df2bed2..158feb9 100755
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -20,6 +20,8 @@
  */
 package jalview.io;
 
+import java.util.Locale;
+
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
 import jalview.util.Comparison;
@@ -184,7 +186,7 @@ public class MSFfile extends AlignFile
   public int checkSum(String seq)
   {
     int check = 0;
-    String sequence = seq.toUpperCase();
+    String sequence = seq.toUpperCase(Locale.ROOT);
 
     for (int i = 0; i < sequence.length(); i++)
     {
@@ -370,8 +372,7 @@ public class MSFfile extends AlignFile
           int end = start + 10;
 
           int length = s[j].getLength();
-          if ((end < length)
-                  && (start < length))
+          if ((end < length) && (start < length))
           {
             out.append(s[j].getSequence(start, end));