X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FMSFfile.java;h=158feb9c03649918bb46e7a3316ce44dbf80adfa;hb=62fb9a3042bdc6daaad8218d47b12cb912907354;hp=b05acff59b3daf445fae36cefa96ea7a649d751b;hpb=ff450fad8709ae81919af7a15ea382af7292794c;p=jalview.git

diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index b05acff..158feb9 100755
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -20,6 +20,8 @@
  */
 package jalview.io;
 
+import java.util.Locale;
+
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
 import jalview.util.Comparison;
@@ -184,7 +186,7 @@ public class MSFfile extends AlignFile
   public int checkSum(String seq)
   {
     int check = 0;
-    String sequence = seq.toUpperCase();
+    String sequence = seq.toUpperCase(Locale.ROOT);
 
     for (int i = 0; i < sequence.length(); i++)
     {
@@ -278,10 +280,10 @@ public class MSFfile extends AlignFile
       i++;
     }
 
-    Format maxLenpad = new Format("%" + (new String("" + max)).length()
-            + "d");
-    Format maxChkpad = new Format("%" + (new String("1" + max)).length()
-            + "d");
+    Format maxLenpad = new Format(
+            "%" + (new String("" + max)).length() + "d");
+    Format maxChkpad = new Format(
+            "%" + (new String("1" + max)).length() + "d");
     i = 0;
 
     int bigChecksum = 0;
@@ -370,8 +372,7 @@ public class MSFfile extends AlignFile
           int end = start + 10;
 
           int length = s[j].getLength();
-          if ((end < length)
-                  && (start < length))
+          if ((end < length) && (start < length))
           {
             out.append(s[j].getSequence(start, end));