X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FMSFfile.java;h=9495f82b972a7b2bae61abdeb56d9c1ab17c499d;hb=fd74c15772fcb012638378490e94ed851ddf77bb;hp=b9cad0afe74deb195039a865c729f17834cf22fa;hpb=1ecf6419aba86993b3c223bf5ec0fa79427baf85;p=jalview.git

diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index b9cad0a..9495f82 100755
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -71,7 +71,8 @@ public class MSFfile extends AlignFile {
       }
     }
     } catch (IOException e) {
-      System.out.println("Exception parsing MSFFile " + e);
+      System.err.println("Exception parsing MSFFile " + e);
+      e.printStackTrace();
     }
 
     this.noSeqs = headers.size();
@@ -111,7 +112,7 @@ public class MSFfile extends AlignFile {
         seqs.addElement(newSeq);
 
       } else {
-        System.out.println("Can't find sequence for " + headers.elementAt(i));
+        System.err.println("MSFFile Parser: Can't find sequence for " + headers.elementAt(i));
       }
     }
 
@@ -133,7 +134,8 @@ public class MSFfile extends AlignFile {
           }
         }
       } catch (Exception e) {
-        System.err.println("Exception " + e);
+        System.err.println("Exception during MSF Checksum calculation");
+        e.printStackTrace();
       }
     }
     return check % 10000;