X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FMSFfile.java;h=f62ad81f999e5ba713fc471f2d88aaf4d7d379a0;hb=0e5be6925629dad5a92036d728f8856fde2d5488;hp=c81be4b97a44153891f9a84aba4a47e3d06cd18f;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java index c81be4b..f62ad81 100755 --- a/src/jalview/io/MSFfile.java +++ b/src/jalview/io/MSFfile.java @@ -20,11 +20,14 @@ */ package jalview.io; -import java.io.*; -import java.util.*; +import jalview.datamodel.Sequence; +import jalview.datamodel.SequenceI; +import jalview.util.Format; -import jalview.datamodel.*; -import jalview.util.*; +import java.io.IOException; +import java.util.Hashtable; +import java.util.StringTokenizer; +import java.util.Vector; /** * DOCUMENT ME! @@ -63,13 +66,10 @@ public class MSFfile extends AlignFile super(source); } - { - // TODO Auto-generated constructor stub - } - /** * DOCUMENT ME! */ + @Override public void parse() throws IOException { int i = 0; @@ -344,12 +344,7 @@ public class MSFfile extends AlignFile out.append(newline); int len = 50; - int nochunks = (max / len) + 1; - - if ((max % len) == 0) - { - nochunks--; - } + int nochunks = (max / len) + (max % len > 0 ? 1 : 0); for (i = 0; i < nochunks; i++) { @@ -411,6 +406,7 @@ public class MSFfile extends AlignFile * * @return DOCUMENT ME! */ + @Override public String print() { return print(getSeqsAsArray());