X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FModellerDescription.java;h=1ab95451a2be99a890c622dce470cfe0dfc0789b;hb=refs%2Fheads%2Freleases%2FRelease_2_10_0_Branch;hp=30f46bf64e1f256a0838f55bac5371ea97b61d49;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/io/ModellerDescription.java b/src/jalview/io/ModellerDescription.java
index 30f46bf..1ab9545 100755
--- a/src/jalview/io/ModellerDescription.java
+++ b/src/jalview/io/ModellerDescription.java
@@ -20,7 +20,7 @@
  */
 package jalview.io;
 
-import jalview.datamodel.*;
+import jalview.datamodel.SequenceI;
 
 public class ModellerDescription
 {
@@ -29,13 +29,12 @@ public class ModellerDescription
    * single line, and sequence start/end and other properties. See PIRFile IO
    * for its use.
    */
-  final String[] seqTypes =
-  { "sequence", "structure", "structureX", "structureN" };
+  final String[] seqTypes = { "sequence", "structure", "structureX",
+      "structureN" };
 
-  final String[] Fields =
-  { "objectType", "objectId", "startField", "startCode", "endField",
-      "endCode", "description1", "description2", "resolutionField",
-      "tailField" };
+  final String[] Fields = { "objectType", "objectId", "startField",
+      "startCode", "endField", "endCode", "description1", "description2",
+      "resolutionField", "tailField" };
 
   final int TYPE = 0;
 
@@ -60,11 +59,9 @@ public class ModellerDescription
   /**
    * 0 is free text or empty 1 is something that parses to an integer, or \@
    */
-  final int Types[] =
-  { 0, 0, 1, 0, 1, 0, 0, 0, 0, 0 };
+  final int Types[] = { 0, 0, 1, 0, 1, 0, 0, 0, 0, 0 };
 
-  final char Padding[] =
-  { ' ', ' ', ' ', '.', ' ', '.', '.', '.', '.', '.' };
+  final char Padding[] = { ' ', ' ', ' ', '.', ' ', '.', '.', '.', '.', '.' };
 
   java.util.Hashtable fields = new java.util.Hashtable();
 
@@ -271,10 +268,10 @@ public class ModellerDescription
       // sets the local reference field
       int t = 0; // sequence
       if (seq.getDatasetSequence() != null
-              && seq.getDatasetSequence().getDBRef() != null)
+              && seq.getDatasetSequence().getDBRefs() != null)
       {
         jalview.datamodel.DBRefEntry[] dbr = seq.getDatasetSequence()
-                .getDBRef();
+                .getDBRefs();
         int i, j;
         for (i = 0, j = dbr.length; i < j; i++)
         {