X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FModellerDescription.java;h=a24afff2eb4e5912a5b614bd9c354df9a4e8b689;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=fd28956d3c9e8b22e961fa196410c29c0496de6a;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git diff --git a/src/jalview/io/ModellerDescription.java b/src/jalview/io/ModellerDescription.java index fd28956..a24afff 100755 --- a/src/jalview/io/ModellerDescription.java +++ b/src/jalview/io/ModellerDescription.java @@ -1,24 +1,26 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.io; -import jalview.datamodel.*; +import jalview.datamodel.SequenceI; public class ModellerDescription { @@ -27,13 +29,12 @@ public class ModellerDescription * single line, and sequence start/end and other properties. See PIRFile IO * for its use. */ - final String[] seqTypes = - { "sequence", "structure", "structureX", "structureN" }; + final String[] seqTypes = { "sequence", "structure", "structureX", + "structureN" }; - final String[] Fields = - { "objectType", "objectId", "startField", "startCode", "endField", - "endCode", "description1", "description2", "resolutionField", - "tailField" }; + final String[] Fields = { "objectType", "objectId", "startField", + "startCode", "endField", "endCode", "description1", "description2", + "resolutionField", "tailField" }; final int TYPE = 0; @@ -58,11 +59,9 @@ public class ModellerDescription /** * 0 is free text or empty 1 is something that parses to an integer, or \@ */ - final int Types[] = - { 0, 0, 1, 0, 1, 0, 0, 0, 0, 0 }; + final int Types[] = { 0, 0, 1, 0, 1, 0, 0, 0, 0, 0 }; - final char Padding[] = - { ' ', ' ', ' ', '.', ' ', '.', '.', '.', '.', '.' }; + final char Padding[] = { ' ', ' ', ' ', '.', ' ', '.', '.', '.', '.', '.' }; java.util.Hashtable fields = new java.util.Hashtable();