X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FModellerDescription.java;h=a56f2af0b1165c911f9f89eaff30e0b8b0ccc688;hb=5571d7868cad5493b52c9fc421c88c025e7c2d35;hp=7e05b15482d6828fbfa191a734ab91344f8edfd9;hpb=26b115b0a77d521da92a06572d9b7819c2d0d49a;p=jalview.git diff --git a/src/jalview/io/ModellerDescription.java b/src/jalview/io/ModellerDescription.java index 7e05b15..a56f2af 100755 --- a/src/jalview/io/ModellerDescription.java +++ b/src/jalview/io/ModellerDescription.java @@ -25,6 +25,8 @@ import jalview.datamodel.SequenceI; import java.util.List; +import com.stevesoft.pat.Regex; + public class ModellerDescription { /** @@ -88,7 +90,7 @@ public class ModellerDescription resCode(int v) { - val = new Integer(v); + val = Integer.valueOf(v); field = val.toString(); } }; @@ -96,7 +98,7 @@ public class ModellerDescription private resCode validResidueCode(String field) { Integer val = null; - com.stevesoft.pat.Regex r = new com.stevesoft.pat.Regex( + Regex r = new Regex( "\\s*((([-0-9]+).?)|FIRST|LAST|@)"); if (!r.search(field))